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PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

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Page 1: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 2: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Page 3: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 4: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 5: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Rhagium inquisitor AFP (RiAFP) may overcome limitations of current AFPs

Page 6: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 7: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 8: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 9: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

- + - +

Western Blot (α-6His)

Page 10: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

RiAFP

Page 11: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 12: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 13: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 14: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Page 15: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

a

Page 16: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

••

Page 17: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 18: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

9.0mg/mL RiAFP

Page 19: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 20: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 21: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 22: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Page 23: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

1

2

3

4

5

Page 24: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 25: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

•–

Page 26: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Aaron Hakim Darren Zhu Chidi Akusobi

Durga Thakral Alexander Li Kara Brower

Aaron Lewis Steven Zhu Hill Ryan

Page 27: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

References

Page 28: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 29: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Backup Slides

Page 30: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Figure 6: Fluorimetry was used to measure flourescence. Excitation

wavelength 488nm. Emission scan 500 to 650 nm

Page 31: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Figure 3: SDS-PAGE stained with Coomassie blue;

Uninduced eGFP-TmAFP (left), induced eGFP-TmAFP (right)

Page 32: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Figure 5: Western Blot, probed with

His-6 antibody;

Uninduced eGFP-TmAFP (left),

induced eGFP-TmAFP (right)

Figure 4: Western Blot, probed with

mouse α-GFP-IgG2a antibody.

Uninduced eGFP-TmAFP (left),

Induced eGFP-TmAFP (right)

Page 33: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Figure 8: Western Blot, probed with eGFP antibody.

Lane 0: ladder, Lane 1: uninduced eGFP-RiAFP in BL21, Lane 2: induced

eGFP-RiAFP in BL21, Lane 3: uninduced eGFP-RiAFP in Origami, Lane 4:

induced eGFP-RiAFP in Origami, Lane 5: uninduced RiAFP in BL21, Lane 6:

induced RiAFP in BL21, Lane 7: uninduced RiAFP in Origami, Lane 8:

induced RiAFP in Origami

Page 34: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

RiAFP: First Hyperactive Antifreeze Protein Expressed and Purified in Large Quantities

150mg/L cells, (0.2mM) RiAFP-GFP

RiAFP-eGFP

eGFP & TEV

RiAFP

Page 35: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

RiAFP Cell Lysate Inhibits Ice Recrystallization

30% sucrose + Pure Water (-ve control)

30% sucrose + Lysate Buffer 30% sucrose + RiAFP Cell Lysate

•50X

Page 36: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Ice Recrystallization Inhibition: Splat Assay

Figure 13: Splat assay shows

concentration dependent

inhibition of ice recrystallization.

Ice recrystallization was

allowed to take place for five

hours at -10oC before imaging.

Page 37: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

Ice Recrystallization Inhibition:

Figure 14: Splat assay

shows concentration

dependent inhibition of ice

recrystallization. Ice

recrystallization was

allowed to take place for

twelve hours at -10oC

before imaging

Page 38: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 39: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

2.0 M ammonium carboxylate 1.6 M NaH2PO4, 0.4 M KH2PO4

Page 40: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

10X 20X

4.5mg/mL RiAFP 9.0mg/mL RiAFP

Page 41: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 42: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 43: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 44: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu
Page 45: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

𝐾

𝑗((1 − 𝑀)𝑁)𝐾−𝑗(1 − (1 − 𝑀)𝑁)𝑗

𝐾

𝑗=0

Key: Red = 1 cycle, Green = 10 cycles, Blue = 30 cycles, Orange = 50 cycles, Purple = 90 cycles.

Page 46: PowerPoint Presentation2011.igem.org/files/presentation/Yale_Championship.pdf · Aaron Hakim Darren Zhu Chidi Akusobi Durga Thakral Alexander Li Kara Brower Aaron Lewis Steven Zhu

𝐾

𝑗((1 − 𝑀)𝑁)𝐾−𝑗(1 − (1 − 𝑀)𝑁)𝑗

𝐾

𝑗=0